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Tutorial: MONAI Label for Medical Imaging - Shared screen with speaker view
Ying Zhang
23:55
MONAI Core Tutorial next week registration: https://ufl.zoom.us/meeting/register/tJckcuGuqjgpH9dykN7x6aRujiTxOJ-x8Oqx
Jens Rosenberg
39:26
Can Monai read Philips or Siemens dicom data?
Mayank Pahadia
51:34
Can a segmentation software like ITK SNAP be used instead of 3D Slicer?
Mayank Pahadia
54:33
Thank you! mayankpahadia@ufl.edu
Pedro Tirado
01:18:28
does anyone know how to best start monailabel on hipergator? there's a few ways to do so...
Ying Zhang
01:19:37
MONAI is installed on HiPerGator. Huiwen will show you how to use it. We will also put up a wiki page on the instructions.
Jingxi Weng
01:20:07
Thanks! Looking forward to it.
Jennifer Cremer
01:21:05
Will the recording be available after? I have another meeting to attend
Ying Zhang
01:21:32
Yes, we will send the recording to all attendees.
Pedro Tirado
01:21:44
sounds good, thank you
Jennifer Cremer
01:21:50
Fantastic! Thank you
Dimitri Bourilkov
01:24:17
The MONAI label server and 3Dslicer client are installed on HiPerGator.
Pedro Tirado
01:27:10
is anyone else getting the following error when trying to run "monailabel apps --name deepedit --download --output ."?
Pedro Tirado
01:27:15
FileNotFoundError: [Errno 2] No such file or directory: '/apps/python/3.8/monailabel/sample-apps'
Samantha Pedersen
01:27:42
I have to join another meeting - thank you for the presentation, Huiwen! Look forward to the recording.
Ying Zhang
01:30:53
@Pedro: perhaps some file permission issues. We will fix it.
Dimitri Bourilkov
01:32:07
@Pedro We will provide documentation how to use it.
Pedro Tirado
01:32:18
thank you!
Jingxi Weng
01:33:17
Will we be able to use MONAI without Hipergator, for example on our local workstations?
Pedro Tirado
01:33:42
yes ^^^ it's pretty straightforward to install via docker
Ying Zhang
01:33:49
Yes, you can download it from Nvidia site. Just google Nvidia MONAI
Jingxi Weng
01:33:59
Thanks!
Pedro Tirado
01:40:59
not sure if anyone else is getting this same issue, but trying to launch Slicer after module loading it causes: "exit abnormally - Report the problem."
Pedro Tirado
01:41:33
error: GLSL 1.50 is not supported. Supported versions are: 1.10, 1.20, 1.00 ES, and 3.00 ES
Ying Zhang
01:42:50
The 3DSlicer currently only works on hwgui partition on hipergator. We will have it installed on HPG AI.
Jason Liu
01:44:59
can we get the slides?
Ying Zhang
01:45:09
Yes.
Dimitri Bourilkov
01:46:03
@Pedro Slicer now works through OOD as just shown in the demo.
jason widrich
01:46:12
what format can we use to create our own image datasets. would photograph imagimg need to be converted to DICOM. thanks
Joseph Gullett
01:48:58
Thank you for this tutorial!
Anita Gohel
01:49:47
Thank you!
Ruogu Fang
01:51:27
Thank you, Huiwen!
Mayank Pahadia
01:51:32
Thank you!
Yong He
01:51:59
thank you