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Room 1: BioDigiCon 2022 - Shared screen with speaker view
Lindsay Walker
25:27
https://pollev.com/katiepearson723
Eric Chapman
25:47
Coleoptera
Rhonda Ridley
26:42
plants
Gil Nelson (iDigBio)
26:48
Conference Evaluation survey: https://ufl.qualtrics.com/jfe/form/SV_1TU30gB6fOvx0we
Rhonda Ridley
27:20
2
Eric Chapman
27:24
4
Katie Pearson - SSH
30:10
https://symbiota.org/seinet/
Lindsay Walker
31:18
https://symbiota.org/symbiota-portals/
Lindsay Walker
33:54
https://biokic4.rc.asu.edu/sandbox/portal/index.php
Beth Kaplin
34:11
Do you provide any assistance for groups trying to set up a portal using Symbiota? We have been trying to do this with Symbiota for the National Herbarium of Rwanda but really struggled and were told by the designers that they could not help
Ian Engelbrecht
34:24
We need to see the login details please
Katie Pearson - SSH
35:00
BioDigiCon2022
Katie Pearson - SSH
35:06
idigbiossh
Beth Kaplin
35:55
Yes we had IT support on the software uploading but it never worked for us
Lindsay Walker
36:23
help@symbiota.org
Beth Kaplin
36:29
Thank you
Nico Franz
37:10
Portal set up -- a one-time thing -- does require considerable expertise and we are available to discuss and hopefully support: https://help.symbiota.org/ (submit a ticket here).
Beth Kaplin
37:38
Great thanks
Katie Pearson - SSH
39:03
My profile > Occurrence management > name of the collection
Katie Pearson - SSH
44:58
Edit Existing Occurrence Records
David Shorthouse
49:37
Do you differentiate the verbatim determination from assertions made from a link to a name in a look-up hierarchy?
Gil Nelson (iDigBio)
49:54
CMS = collection management system
David Shorthouse
50:59
Super! Thanks for that. Important for provenance-sake because don't want to misrepresent the determiner's intent.
Lindsay Walker
53:01
If taxonomy in your portal is something you'd like to know more about, we have a recording about the taxonomic thesaurus from the August Symbiota Support Group meeting on our YouTube channel: https://www.youtube.com/channel/UC7glMVLRnTA6ES3VTsci7iQ
Lindsey Worcester
58:15
How do you handle original determinations (from the label) vs. annotations? If, the most current annotations was the only thing entered for the specimen? Would you use the det. history tab to back fill in the other annotations?
Frank Bungartz
58:44
That happens in lichens all the time. We use two separate occurrence records and for one print out a reference card.
Lindsey Worcester
59:57
Thank you!
Bailey Jorgensen
01:03:31
Hi Lindsay!! :D
Lindsay Walker
01:04:05
Thanks for joining us! 🙂
Gil Nelson (iDigBio)
01:06:02
https://docs.gbif.org/georeferencing-best-practices/1.0/en/
Lindsay Walker
01:06:23
https://docs.gbif.org/georeferencing-best-practices/1.0/en/
Carla Novoa
01:06:45
how long we can “play” with the Sand Box?
Lindsay Walker
01:07:09
There is no time limit!
Carla Novoa
01:07:21
🥰
Carla Novoa
01:10:46
What do you recommend for geo-referencing in Latin America? If I remember correctly, Geolocate is more for the USA.
Thomas McElrath
01:13:45
I use Geolocate for Latin America all the time!
Thomas McElrath
01:14:09
Yeah it's not as detailed, but the more its used the more detailed it will become 🙂
K. Samanta Orellana
01:14:43
GeoLocate works great for Latin America! And if you know the region is much easier :)
Edward Gilbert
01:15:13
Null political units (e.g. country, state, county) used to be populated when a lat/long was entered, but we deactivated this feature once Google increased their pricing. It can be reactivated within a portal, if the managers have funds to support that. Other tools are being developed to add this functionality without relying on for-profit services.
Carla Novoa
01:15:32
ohh ^^Thank you @k.Samanta
Lindsay Walker
01:15:34
It can give you a good "head start” on your coordinates, even if they are not placed perfectly. Then you can manually refine them.
Harpo Faust
01:15:39
Can you add linked resources during a bulk cvs file upload?
Harpo Faust
01:18:54
Could you do a bulk update to specimens or do you have to type this in for each individual specimens?
Amanda Bremner
01:18:59
I pressed the button by mistake
Frank Bungartz
01:21:38
Can I cite these "linked-in" specimen records to Checklists???
Edward Gilbert
01:21:55
There is also a page that listed duplicates within your collections that have a different determination applied within another institution (e.g. specimen might need to be annotated)
Frank Bungartz
01:22:19
… as a voucher in the checklist?
Harpo Faust
01:22:55
Are the checklists only ones that exist or are made on seinet?
Frank Bungartz
01:22:59
But I am talking about the linked in ones from GBIF etc.
Frank Bungartz
01:23:39
OK, makes sense.
Frank Bungartz
01:24:12
Sorry to digress ;-)
Lindsay Walker
01:24:34
Checklist recording series: https://youtube.com/playlist?list=PLkh-Tgi56p5MMeBIRQBCCE-ob23CT1So4
Harpo Faust
01:29:19
Can you do batch update for a specific set of specimens?
Harpo Faust
01:30:11
thank you
Harpo Faust
01:32:18
Would you ever be open to adding an automated indiegnous land tracker using the native-land.ca layers?
Harpo Faust
01:32:36
that then could be added to plant specimen labels
Megan King
01:38:43
If you go into custom field and put contains 00 it works to show dates with00
Megan King
01:39:06
Date - Contains - 00
Jamie Smith
01:39:59
is there a wildcard like *
Megan King
01:40:14
I missed the first part of the conversation sorry I just saw the 00
Greg Post
01:40:50
Update on the availability of the "BioDigiCon2022" login for the sandbox -
Greg Post
01:40:53
We will leave this account active through Oct 14. You're welcome to register for your own account on the sandbox (https://biokic4.rc.asu.edu/sandbox/portal/profile/newprofile.php?refurl=/sandbox/portal/index.php?)
Lindsay Walker
01:41:50
@Jamie - If you hover over some of the fields in the search form, an explanation of how to use the wildcard search will appear.
Jamie Smith
01:43:11
Thanks @Lindsay Walker
Katie Pearson - SSH
01:43:18
Skeletal data entry tool
Donna Ford-Werntz
01:45:09
Sorry--got back late: whose workflow is this?
Lindsay Walker
01:45:55
@Donna - Some members of the SERNEC TCN use this workflow.
Edward Gilbert
01:51:05
The trait mining tool translates verbatim text into a standardized trait definition. Trait is phenology in this example, but other trait definitions can be used.
Lindsay Walker
01:56:58
https://library.big-bee.net/portal/imagelib/search.php
Frank Bungartz
01:57:25
Can these tags be modified by a portal manager to be more useful for a particu
Frank Bungartz
01:57:32
particular portal?
Frank Bungartz
01:59:07
These tags could easily be shared via XMP.
Ron Eng
01:59:36
Katie, Lindsay & Ed, great presentation! thank you very much!
Ron Eng
01:59:46
Lindsay, nice to see you!
Katie Pearson - SSH
02:02:11
https://symbiota.org/
Katie Pearson - SSH
02:02:56
https://youtu.be/4uj15JCzHg4
Katie Pearson - SSH
02:03:03
https://youtu.be/GpjbMdPMSH0
Lindsay Walker
02:03:19
Hi Ron! Thanks for joining us.
Katie Pearson - SSH
02:03:51
https://symbiota.org/digitization-workflows/
Katie Pearson - SSH
02:06:31
help@symbiota.org
Megan King
02:09:08
Love this tool - skeletal records
K. Samanta Orellana
02:12:07
Yes! I use that tool a lot! If you check "All fields" you will also get the taxonomic information copied.
Sangmi Lee
02:12:14
We use “All fields” instead which makes carrying all information.
Nico Franz
02:13:01
SCAN is not managed by ASU team.
K. Samanta Orellana
02:13:02
(I use ecdysis).
Megan King
02:14:10
we're currently using scan as well, and our collection is live managed and I find it difficult to barcode out insect specimens there as well since we're fully entering label data during barcoding
Megan King
02:14:40
Is there an advantage to be using ecdysis over SCAN why would we want to leave SAN
Megan King
02:14:42
SCAN
Nico Franz
02:15:37
ecdysis is restricted to live managed collecctions. Going there affords you full SSH services. Snapshot still output to SCAN.
Megan King
02:16:20
snapshot
Megan King
02:16:24
yes okay!
Megan King
02:17:00
I was under the impression they were updating, but I can follow up on this thank you
Kate Wellspring
02:17:40
This has been such an outstanding workshop. It's been extremely helpful. Many thanks!
Amanda Bremner
02:17:43
Thanks so much, great workshop!
Nico Franz
02:17:44
Feel free to send an email to Andrew Johnston (ajohnston@asu.edu) about shifting to ecdysis for live management. ajohnston@asu.edu
Lindsay Walker
02:17:51
You can email us at help@symbiota.org! :)
Nico Franz
02:18:20
Thanks to all attendees for your interest/engagement. Great job Katie & Lindsay!
Frank Bungartz
02:18:28
Excellent. Thanks !!!
Kyle Lough`
02:18:42
Thanks Katie & Lindsay!
Lindsay Walker
02:18:44
Workflow documentation can be found here: https://symbiota.org/digitization-workflows/
Gil Nelson (iDigBio)
02:18:45
Excellent!
Jillian Goodwin (iDigBio)
02:18:55
https://ufl.qualtrics.com/jfe/form/SV_1TU30gB6fOvx0we